Publications

SG Manohar, N Zokaei, SJ Fallon, TP Vogels, M. Husain. A neural model of working memory. bioRxiv, 2017.

RP Costa, IAM Assael, B Shillingford, N de Freitas, TP Vogels. Cortical microcircuits as gated-recurrent neural networks. Adv. Neural Inf. Process. Syst., 2017.

RP Costa, Z Padamsey, JA D’Amour, NJ Emptage, RC Froemke, TP Vogels. Synaptic Transmission Optimization Predicts Expression Loci of Long-Term Plasticity. Neuron, 2017.

G Hennequin, EJ Agnes, TP Vogels. Inhibitory Plasticity: Balance, Control, and Codependence. Annu. Rev. Neurosci., 2017.

HC Barron, TP Vogels, TE Behrens, M Ramaswami. Inhibitory engrams in perception and memory. Proc. Natl. Acad. Sci. U.S.A., 2017.

TP Vogels, LC Griffith. Editorial overview: Neurobiology of learning and plasticity 2017. Curr. Opin. Neurobiol., 2017.

WF Podlaski, A Seeholzer, LN Groschner, G Miesenböck, R Ranjan, TP Vogels. Mapping the function of neuronal ion channels in model and experiment. eLife, 2017.

C Clopath, TP Vogels, RC Froemke, H Sprekeler. Receptive field formation by interacting excitatory and inhibitory synaptic plasticity. bioRxivorg, 2016.

HC Barron, TP Vogels, UE Emir, TR Makin, J O’Shea, S Clare, S Jbabdi, RJ Dolan, TEJ Behrens. Unmasking Latent Inhibitory Connections in Human Cortex to Reveal Dormant Cortical Memories. Neuron, 2016.

C Tomm, M Avermann, C Petersen, W Gerstner, TP Vogels. Connection-type-specific biases make uniform random network models consistent with cortical recordings. J. Neurophysiol., 2014.

G Hennequin, TP Vogels*, W Gerstner*. Optimal control of transient dynamics in balanced networks supports generation of complex movements. Neuron, 2014.

R Araya, TP Vogels, R Yuste. Activity-dependent dendritic spine neck changes are correlated with synaptic strength. Proc. Natl. Acad. Sci. U.S.A., 2014.

TP Vogels, RC Froemke, N Doyon, M Gilson, JS Haas, R Liu, A Maffei, P Miller, CJ Wierenga, MA Woodin, F Zenke, H Sprekeler. Inhibitory synaptic plasticity: spike timing-dependence and putative network function. Front. Neural Circuits, 2013.

G Hennequin, TP Vogels, W Gerstner. Non-normal amplification in random balanced neuronal networks. Phys. Rev. E, 2012.

TP Vogels*, H Sprekeler*, F Zenke, C Clopath, W Gerstner. Inhibitory Plasticity Balances Excitation and Inhibition in Sensory Pathways and Memory Networks. AAAS, 2011.

AR Woodruff, LM McGarry, TP Vogels, M Inan, SA Anderson, R Yuste. State-Dependent Function of Neocortical Chandelier Cells. J. Neurosci., 2011.

TP Vogels, LF Abbott. Gating multiple signals through detailed balance of excitation and inhibition in spiking networks. Nat. Neurosci., 2009.

TP Vogels, LF Abbott. Gating deficits in model networks: a path to schizophrenia?. Pharmacopsychiatry, 2007.

TP Vogels, K Rajan, LF Abbott. Neural network dynamics. Annu. Rev. Neurosci., 2005.

TP Vogels, LF Abbott. Signal propagation and logic gating in networks of integrate-and-fire neurons. Journal of neuroscience, 2005.


Code

RP Costa, et al., Neuron, 2017.

A graphical interface for the model can be accessed at ModelDB.

The datasets analyzed and respective estimations reported in this paper have been deposited to Mendeley Data and are available at:

RP Costa, et al., Adv. Neural Inf. Process. Syst., 2017.

3rd party code implementation available at GitHub.

WF Podlaski, et al., eLife, 2017.

ICGenealogy code packages are available at GitHub.

TP Vogels, et al., AAAS, 2011.

The code is available at ModelDB and Open Source Brain.

R Brette, et al., Journal of computational neuroscience, 2007.

TP Vogels, et al., Journal of neuroscience, 2005.

This package provides a series of codes that simulate networks of spiking neurons (excitatory and inhibitory, integrate-and-fire or Hodgkin-Huxley type, current-based or conductance-based synapses; some of them are event-based). The same networks are implemented in different simulators (NEURON, GENESIS, NEST, NCS, CSIM, XPP, SPLIT, MVAspike; there is also a couple of implementations in SciLab and C++).